PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473445
Common NameARALYDRAFT_473445
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LSD
Protein Properties Length: 155aa    MW: 15920.5 Da    PI: 7.9164
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473445genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.4e-153761125
  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
             C+gCr+lL+YP GA+sV+Ca+C++V
   473445 37 CSGCRNLLMYPVGATSVCCAVCNAV 61
             ************************9 PP
2zf-LSD146.75.3e-1576100125
  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
              CggC+tlL+Y rGA+sV+C++C+tV
   473445  76 CGGCHTLLMYIRGATSVQCSCCHTV 100
              ************************9 PP
3zf-LSD140.15.9e-13114138125
  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
              Cg+C+ lL+Y +GA+sV+Ca+C+++
   473445 114 CGNCKMLLMYQYGARSVKCAVCNFI 138
              ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-143464IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-113761IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.6E-1573102IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-1276100IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-11111141IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-12114138IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPALVPSY SPPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA  60
VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCKML  120
LMYQYGARSV KCAVCNFITT VGGSTSTTDL KFNN*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap473445
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0576750.0AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY1169510.0AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds.
GenBankAY3496180.0AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890995.11e-107protein LOL1
SwissprotQ93ZB16e-91LOL1_ARATH; Protein LOL1
TrEMBLD7KHL41e-105D7KHL4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3399__AT1G32540.31e-106(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.37e-79lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]