PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

473458

Common Name

ARALYDRAFT_473458

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 327aa MW: 36392 Da PI: 8.7962

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
473458	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	21.3	7.1e-07	27	92	5	69
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....ae 69 + +C +CGn a+ C + C+ CC + C hv v a+ e+ q+ +++ss+++as+ ++ 473458 27 KPKCIQCGNVARSRCPFYSCKGCCSRAENPCPIHVLK--V-ASTSGEKTQAPSTPSSEQKASEgtpgST 92 568*******************************964..3.3333344444444333333333223222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.8E-5	29	102	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MPSSPSLSNN GLSSVVTPPK TLRGLNKPKC IQCGNVARSR CPFYSCKGCC SRAENPCPIH 60 VLKVASTSGE KTQAPSTPSS EQKASEGTPG STTRVSSIRQ LSSNFAQFNN LNASSRQRKP 120 LTIKDAQALN EWRFTKLKEY RDRNIEVENE AFDRYMSNVN LLEEAFSFTS VPDEEIHGAA 180 ASEQNKEESI VSELKLRLRS NSARTESFKK RIAETVKAGL VKLKRPDIGS SSDDQDEIKR 240 RIKRSKWEEK GSALNEIIDK LNKARTEEDL KSCLEMKSKL CGQVSSTATS EENKVFPDTV 300 REVEMSEDAL RRIAESLQSF DRVEML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	473458

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084750	0.0	AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870566.1	0.0	uncharacterized protein LOC9329799
TrEMBL	D7KIB9	0.0	D7KIB9_ARALL; Electron carrier/ iron ion binding protein
STRING	fgenesh2_kg.1__3412__AT1G32730.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	0.0

Link Out ? help Back to Top
Phytozome	473458
Entrez Gene	9329799