PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473681
Common NameARALYDRAFT_473681
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 203aa    MW: 22955.8 Da    PI: 8.5898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473681genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+d+++  G g+W++ ++  g+ R++k+c++rw +yl
           473681 14 KGAWTKEEDQLLIDYIRTNGEGSWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.81.8e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T  Ed+++v+++  +G++ W++Ia +++ gRt++++k++w+++
           473681  67 RGNFTDGEDQIIVKLHSIFGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.921961IPR017930Myb domain
SuperFamilySSF466897.86E-2913108IPR009057Homeodomain-like
SMARTSM007176.7E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001672.55E-101661No hitNo description
PROSITE profilePS5129426.71662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665116IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.8E-1467111IPR001005SANT/Myb domain
CDDcd001678.39E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009651Biological Processresponse to salt stress
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQLLIDYIR TNGEGSWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDGEDQIIVK LHSIFGNKWS LIAGKLPGRT DNEIKNYWNT HVKRKLLSHG  120
IDPKTHRSIN VSKTTPFHTR NEDVKSTFPD HNGVIKLKTE TSCENGASTS GTTIDEDLRL  180
NVECDYSYDH VDKELNLDLT LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
1h8a_C3e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. {ECO:0000250|UniProtKB:Q38850}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap473681
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2079910.0AF207991.1 Arabidopsis thaliana putative transcription factor (MYB8) mRNA, complete cds.
GenBankAY5195610.0AY519561.1 Arabidopsis thaliana MYB transcription factor (At1g35515) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891188.11e-149transcription factor MYB8
SwissprotQ9SDS81e-125MYB8_ARATH; Transcription factor MYB8
TrEMBLD7KLV41e-147D7KLV4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3635__AT1G35515.11e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.11e-127high response to osmotic stress 10
Publications ? help Back to Top
  1. Zhu J, et al.
    Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13972
    [PMID:20622156]