PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

473685

Common Name

ARALYDRAFT_473685

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 334aa MW: 34812.9 Da PI: 9.6302

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
473685	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.6	4.5e-38	41	141	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............k 89 +++k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+ + ++s +ss+s+ s++ + 473685 41 TPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANIStLNVSLRSSGSSLSAPlsksfnigraaqN 141 789******************************************************************88888888888888665555545555533330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.56	47	101	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-35	47	150	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MESHNNTTGS AHLVPFMGPI SGSVTTTAQN STTTTVSAAK TPAKRPSKDR HIKVDGRGRR 60 IRMPAICAAR VFQLTRELQH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN ISTLNVSLRS 120 SGSSLSAPLS KSFNIGRAAQ NAAVFGFQQQ LYPPHHIMTD SSSSSLPKTF REGDLFKDPN 180 SLDQEPGSRS PKPGSEAPDQ DPGLTRSRTQ NMIPPMWAVA APTPASTNGG SAFWMLPVGG 240 GGPANVQDPS QHMWAFNPGH YPGRIGSVQL GSMLVGGQQL GLGVAENNNL GLFSGGGGGG 300 GRVGLGMSLE QKPQHQVSDH ATGDQNPTID GSP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	473685

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007887	0.0	AC007887.9 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence.
GenBank	AY056429	0.0	AY056429.1 Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds.
GenBank	AY081714	0.0	AY081714.1 Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870514.1	0.0	transcription factor TCP23
Swissprot	Q9LQF0	0.0	TCP23_ARATH; Transcription factor TCP23
TrEMBL	D7KLV8	0.0	D7KLV8_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.1__3639__AT1G35560.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-159	TCP family protein

Link Out ? help Back to Top
Phytozome	473685
Entrez Gene	9329945