PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473706
Common NameARALYDRAFT_473706
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 313aa    MW: 34051.3 Da    PI: 5.164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473706genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20140189255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  473706 140 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 189
             59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-35139199No hitNo description
SMARTSM003804.3E-40140203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32140198IPR001471AP2/ERF domain
PROSITE profilePS5103223.565140197IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-23140198IPR016177DNA-binding domain
PfamPF008479.0E-15141189IPR001471AP2/ERF domain
PRINTSPR003672.8E-11141152IPR001471AP2/ERF domain
PRINTSPR003672.8E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MADFFGGGHG GELMEALQPF YKSASTSASD SAFASSNDAF ASAPNDPFSS SSYYNPHASF  60
FPSHSTTSYP DLYSGSMTYP SFGSDLQQPE NYQSQFHYQN NITYSHQENT CMLNFIDPSQ  120
PGFLTQPGPA SGSVSKPAKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEEAALAY  180
DRAAFKLRGD SARLNFPALR YQTGSSPGDS GEYGPIQAAV DAKLEAILAE PKNQPGKTER  240
PSRKRAKAAA SSAEQPAAPQ QHSGSGESDG SGSPTSDVMV QEMCEEPEMP WNENFMLGKC  300
PSYEIDWASI LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21139204469ATERF1
3gcc_A3e-21139204469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap473706
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062280.0AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence.
GenBankAC0216660.0AC021666.5 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete sequence.
GenBankAK2284150.0AK228415.1 Arabidopsis thaliana mRNA for putative AP2 domain containing protein RAP2.4 gi|2281633, complete cds, clone: RAFL14-93-D21.
GenBankBT0057580.0BT005758.1 Arabidopsis thaliana clone RAFL14-93-D21 (R20359) putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankBT0060780.0BT006078.1 Arabidopsis thaliana clone U20359 putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870094.10.0ethylene-responsive transcription factor ERF055
SwissprotQ9SKW50.0ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLD7KM020.0D7KM02_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3660__AT1G36060.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-166ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]