PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474091
Common NameARALYDRAFT_474091
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 328aa    MW: 36755.7 Da    PI: 6.5318
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474091genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.42.4e-31186241156
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
              k+r++W+peLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
   474091 186 KQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 241
              79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.368183243IPR017930Myb domain
SuperFamilySSF466899.86E-17184244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-27185244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25186241IPR006447Myb domain, plants
PfamPF002494.6E-8188239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGSLGDELSL GSIFGRGVSM NVVAVERVDE HVKKLEEEKR KIESFELELP LSLQILNDAI  60
LYLKDKRCLE METQPLLKDF ISFNELVKRD ELMREKKFQQ WKANDDHTSK IKSKLEIERN  120
EEKSSMLLIP KVETGLGLGL GLSSIRRKGI VASCGGFTSN SMPQPPPPPA VVPQQPAFLQ  180
QQALRKQRRC WNPELHRRFV DALQQLGGPG VATPKQIREH MQEEGLTNDE VKSHLQKYRL  240
HIRKPNPNAE KQSAVVLGFK LWNSSSQEEE ETGEGGESSK RCNSQSDSPQ GPLQLPSTTT  300
TTGGDSSMED VEDAKSESIQ MERLRSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap474091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216310.0AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
GenBankAY0866940.0AY086694.1 Arabidopsis thaliana clone 2686 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564549.10.0Homeodomain-like superfamily protein
SwissprotQ9FX840.0HHO6_ARATH; Transcription factor HHO6
TrEMBLD7KEY70.0D7KEY7_ARALL; Myb family transcription factor
STRINGfgenesh2_kg.1__4045__AT1G49560.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-175G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]