PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474168
Common NameARALYDRAFT_474168
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 482aa    MW: 54047.8 Da    PI: 6.3468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474168genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS525.41.9e-160544781374
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
             l++lLl+cA++v+sg+l++a+a+L++ls+la+pdgd+mqR+aayfteALa+r+++s+++lykal++++ +++n+see+++++lf+e++Pilk+s+l++N+aIl
  474168  54 LIHLLLTCANHVASGSLQNANAALEQLSHLAAPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQIRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAIL 156
             689**************************************************************************************************** PP

    GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
             ea+ege++vH+iD+d+s++ QW+aL+qa++sRpegpp+lRiTgv++    +ke le++++rL + Ae+l++pf+fn+ v+ rl++l++e+Lrvk+gEalaV++
  474168 157 EAMEGEKMVHVIDLDASEPSQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLEQMAHRLIEEAEKLDIPFQFNP-VVCRLDCLNVEQLRVKTGEALAVSS 254
             **********************************************....9**************************.6899********************* PP

    GRAS 207 vlqlhrll......................................................desvsles..erdevLklvkslsPkvvvvveqeadhnsesF 253
             vlqlh++l                                                      ++s++l+s  ++d +L+++++lsPkv+vv+eq++dhn++++
  474168 255 VLQLHTFLasdddlmrkncalrfqnnpsgvdlqrvlmmshgsaaeahendmsnngyspsgdsASSLPLPSsgRTDCFLNAIWGLSPKVMVVTEQDSDHNGSTL 357
             ************************************************************9977777777779****************************** PP

    GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
             +er+le+l++y+alfd+le+k+pr+s++rikvE++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgyr++eesg
  474168 358 MERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIIACEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESG 460
             ******************************************************************************************************* PP

    GRAS 357 slvlgWkdrpLvsvSaWr 374
             ++v++W+drpL+svSaWr
  474168 461 CAVICWQDRPLYSVSAWR 478
             *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.67328458IPR005202Transcription factor GRAS
PfamPF035146.4E-15854478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT  60
CANHVASGSL QNANAALEQL SHLAAPDGDT MQRIAAYFTE ALANRILKSW PGLYKALNAT  120
QIRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPSQWLA  180
LIQAFNSRPE GPPHLRITGV HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VCRLDCLNVE  240
QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA  300
HENDMSNNGY SPSGDSASSL PLPSSGRTDC FLNAIWGLSP KVMVVTEQDS DHNGSTLMER  360
LLESLYTYAA LFDCLETKVP RTSQDRIKVE KMLFGEEIKN IIACEGFERR ERHEKLEKWS  420
QRIDLAGFGN VPLSYYAMLQ ARRLLQGCGF DGYRIKEESG CAVICWQDRP LYSVSAWRCR  480
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-39374801380Protein SCARECROW
5b3h_D1e-39374801380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap474168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAY0561540.0AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankAY0912600.0AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867111.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLD7KFZ50.0D7KFZ5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4122__AT1G50420.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]