PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474191
Common NameARALYDRAFT_474191
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 502aa    MW: 55842.1 Da    PI: 5.7366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474191genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.17.4e-1381335013374
    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
              +L+ecA+av++ dle++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++kf++  aN aI ea
  474191 133 GVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAIAEA 232
             689****************************************************************9...9******************************* PP

    GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
             v++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfef+  +a  ++++e+e+L v++gEalaVn+
  474191 233 VKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG-AALCCTEVEIEKLGVRNGEALAVNF 334
             *********************************************999999**************************.899********************** PP

    GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
              l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn++aceg er+erh
  474191 335 PLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERH 437
             ******************************************************************************************************* PP

    GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
             e l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr
  474191 438 EPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 501
             ************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.713105482IPR005202Transcription factor GRAS
PfamPF035142.6E-135133501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDLSVQTFDS YCTLESSSGT KSHPCLNNIN NSSSTTSFSS NESPISQANN NNLSRFNNHS  60
PDDNNNSPLS GSSATNNNET ELSLMLKDLE TAMMEPDLDN SFNHQGGFGQ QHRVVSSAMY  120
RAMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV  180
ARLASSGSSI YKALRCKDPT GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH  240
IIDFQISQGG QWVSLIRALG ARPGGPPKVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM  300
CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK  360
RLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID VKLARDHKER INVEQHCLAR  420
EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE  480
RDGALYLGWK NQPLITSCAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6013750025378Protein SCARECROW
5b3h_A2e-6013750024377Protein SCARECROW
5b3h_D2e-6013750024377Protein SCARECROW
5hyz_A1e-601355018375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap474191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankAY0349290.0AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868144.10.0LOW QUALITY PROTEIN: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLD7KGQ40.0D7KGQ4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4145__AT1G50600.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]