PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475045
Common NameARALYDRAFT_475045
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 182aa    MW: 20753.6 Da    PI: 5.7856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475045genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-162978255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
             y+GVr++    +Wv+e+r+p        +r++lg++ tae+Aa+a++ a ++l+g
  475045 29 IYRGVRRRN-GDKWVCEVREP-----IhqRRVWLGTYPTAEMAARAHDVAVLALRG 78
            69****877.9******9997.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.70E-272888No hitNo description
PfamPF008471.2E-112878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-292988IPR001471AP2/ERF domain
SMARTSM003804.2E-252992IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202988IPR016177DNA-binding domain
PROSITE profilePS5103222.0622986IPR001471AP2/ERF domain
PRINTSPR003676.9E-83041IPR001471AP2/ERF domain
PRINTSPR003676.9E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MENDDITVAE MKPKKRAGRK IFKETRHPIY RGVRRRNGDK WVCEVREPIH QRRVWLGTYP  60
TAEMAARAHD VAVLALRGRS ACLNFSDSAW RLPVPESTDP DTIRRTAAEA AEMFRPPEFS  120
TGITVLPSAS EFDTSDEGVA GMMMRLAEEP LMSPPRSYID MNTNMYVGEE MYYEDLSLWS  180
Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBM25378322Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap475045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankAY5608410.0AY560841.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g63030) mRNA, complete cds.
GenBankBT0219170.0BT021917.1 Arabidopsis thaliana At1g63030 mRNA, complete cds.
GenBankBT0257420.0BT025742.1 Arabidopsis thaliana At1g63030 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16P170.0AC011000.3 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891191.11e-133dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ61e-127DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLD7KU341e-132D7KU34_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__175__AT1G63030.11e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-130ERF family protein