PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475056
Common NameARALYDRAFT_475056
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 250aa    MW: 28337.4 Da    PI: 8.7947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475056genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1473125155
             CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             ++++h  +Er+RR+++ s f  Lr+llP       ++K s ++   +Av+YIk+Lq
  475056  73 KKVKHRDIERQRRQEVSSLFKSLRTLLPFqY---IQGKRSTSDHIFQAVNYIKDLQ 125
             6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-1569145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-1470129No hitNo description
PROSITE profilePS5088814.32972124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1273143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-578130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDFVHSMFMP DSTYEDGLLF SDSFLLSPFI SYQNNDVCNP ITNKIGGSNK KRSLCDTYGA  60
NEANKNDDDR ESKKVKHRDI ERQRRQEVSS LFKSLRTLLP FQYIQGKRST SDHIFQAVNY  120
IKDLQTKIKE LNEKRNQIKK SIRGTTTIEE CTSSLSSTST LSSSCSCVGD KHITVVVTPC  180
LVGVEIIMSC CLGRNKSGLS SVLQMLAQEQ RLSVVSCLST RRQQRFMHTI VSQEDDGKKI  240
NILELKDKIM
Cis-element ? help Back to Top
SourceLink
PlantRegMap475056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935160.0AB493516.1 Arabidopsis thaliana At1g62975 mRNA for hypothetical protein, partial cds, clone: RAAt1g62975.
GenBankAK2280360.0AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04.
GenBankBT0064080.0BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889682.11e-169transcription factor bHLH125
SwissprotQ9LQ081e-147BH125_ARATH; Transcription factor bHLH125
TrEMBLD7KU430.0D7KU43_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__186__AT1G62975.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-131bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]