PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475156
Common NameARALYDRAFT_475156
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 366aa    MW: 39568.2 Da    PI: 5.1637
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475156genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573132.81.2e-41153243297
  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
             +fqrlwseeDei++LqG+idfka+tgksp++d +afyef+kksisf+vsk+q+++Kir+L+kK+ +k+ k     epsf k+hd+k+felsk iWg
  475156 153 AFQRLWSEEDEISVLQGMIDFKADTGKSPYEDSNAFYEFLKKSISFEVSKNQFMDKIRSLRKKYIGKEGK-----EPSFVKAHDKKAFELSKFIWG 243
             69***************************************************************99888.....********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-32154243IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MTKKLNPLED PPTASSSDDD DVETSEAGEA SDDSSSSEEE QPIKAPIKTP SAATTTTAAA  60
APAKSTAAAD SDSGSETETD SDSESTNPPN SGSGKTIAVS AVNQKKKEDP TSSAALALPA  120
VKSGTKRPAS EATTTTSTKR VKKDEESIKK PGAFQRLWSE EDEISVLQGM IDFKADTGKS  180
PYEDSNAFYE FLKKSISFEV SKNQFMDKIR SLRKKYIGKE GKEPSFVKAH DKKAFELSKF  240
IWGPKGIALD SNVKSNGVSK KSAKKKKIDS VKQELVFVGG GSSNTNGKKV EDGGGDDGGD  300
WFDNSSLVRM ITGLGVDEFY VKQQWSLVPV ETKKIIEEKF KLLQAKELEF VLEKTKFLQE  360
LTSMIV
Cis-element ? help Back to Top
SourceLink
PlantRegMap475156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878220.0AY087822.1 Arabidopsis thaliana clone 38650 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890091.10.0probable transcription factor At1g61730
SwissprotQ9SYA90.0STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLD7KVG50.0D7KVG5_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__286__AT1G61730.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-156DNA-binding storekeeper protein-related transcriptional regulator