PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475240

Common Name

ARALYDRAFT_475240

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 189aa MW: 21423.9 Da PI: 5.3298

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475240	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.3	2.3e-14	11	50	1	39
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavii 39 k+ienk r+v f+kRrng++ KA+EL+ L ++++a+++ 475240 11 KPIENKNMRSVAFTKRRNGLFRKASELCLLSpGTQIAILL 50 78****************************6456666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-13	3	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.867	3	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.29E-23	4	84	No hit	No description
PRINTS	PR00404	3.0E-10	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-16	5	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-13	13	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-10	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGGTKRKIEI KPIENKNMRS VAFTKRRNGL FRKASELCLL SPGTQIAILL TPLSSNSHAS 60 FYSFGHSSVD HVVSSLLHNQ PPLPTDQENR SGVGFWWEDQ AFDRLENVDE LKEAIDAVSR 120 MLNNVRLRLD DAVKSNQRDG SLVNYQEEEV LQLRNEDTNQ ITKFEGETSA SASLLKNLED 180 NLHIDDCFY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00208	DAP	Transfer from AT1G60920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475240

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC018908	0.0	AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002886576.1	1e-139	agamous-like MADS-box protein AGL97
Swissprot	Q9C633	2e-42	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	D7KW73	1e-138	D7KW73_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.2__370__AT1G60920.1	1e-139	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	1e-107	AGAMOUS-like 55

Link Out ? help Back to Top
Phytozome	475240
Entrez Gene	9322642

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]