PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475244
Common NameARALYDRAFT_475244
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21015.6 Da    PI: 6.1351
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475244genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131149138
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
            krienk  r v f+kRr+g++ KA+EL+ L  ++++a++
  475244 11 KRIENKVARMVAFTKRRAGLFRKASELCLLSpGTQIAIL 49
            79****************************757888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-13367IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.727340IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-10525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-15576IPR002100Transcription factor, MADS-box
PfamPF003196.2E-131256IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-102540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGGKKRKIKI KRIENKVARM VAFTKRRAGL FRKASELCLL SPGTQIAILA TPMTSNSHAS  60
FYSFGHSSVD SVVSSLLYDQ PPLPANQDNR SGLGFWWEDK RFDVSENVEE LKDAVDAVSR  120
MLNNVRLRLN DAVKNTQRDG CLEILPQEEE VHQIRNEETK TNQFVGETSG SASFLENEED  180
ILHFDD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap475244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0189080.0AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888121.21e-137agamous-like MADS-box protein AGL97
SwissprotQ9C6338e-41AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLD7KW781e-136D7KW78_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__374__AT1G60880.11e-137(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60880.19e-96AGAMOUS-like-56
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]