PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475296

Common Name

ARALYDRAFT_475296

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 175aa MW: 20846.4 Da PI: 10.1223

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475296	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.6	2.3e-10	12	140	12	128
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy 109 + +v +yLk +++ + +++++ d+y +Pw+L + + yfF++r+ ++ ++ + g W+ g+dk ++s +g+ glkk+ f 475296 12 DAIVANYLKMMIDNVIVWPRHFLRSQDVYCKNPWTLFVtrdpM--VLQAGGYFFVNRSVNSG---KTDG-CEYGCWRIIGRDKVIKSVtTGKILGLKKVYKFC 108 568999*9999999777678**********6322221..2345679987653...3443.578********998788889****9 PP NAM 110 .............kgrapkgektdWvmheyrl 128 ++++ k W m+eyr+ 475296 109 kteeprsfikfveMEKRRARDKRIWAMEEYRF 140 666666665555424445556999****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.479	1	156	IPR003441	NAC domain
Pfam	PF02365	4.1E-8	11	139	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-23	11	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MMKSRRDQSI EDAIVANYLK MMIDNVIVWP RHFLRSQDVY CKNPWTLFVT RDPMVLQAGG 60 YFFVNRSVNS GKTDGCEYGC WRIIGRDKVI KSVTTGKILG LKKVYKFCKT EEPRSFIKFV 120 EMEKRRARDK RIWAMEEYRF ASAWKQDYVI CKIRLLDPQP FEYMLSHHIR GYYK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475296

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT025739	0.0	BT025739.1 Arabidopsis thaliana At1g60240 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T13D8	0.0	AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891776.1	1e-129	uncharacterized protein LOC9322697
TrEMBL	D7KXB1	1e-127	D7KXB1_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__426__AT1G60240.1	1e-128	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16194	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60240.1	1e-110	NAC family protein

Link Out ? help Back to Top
Phytozome	475296
Entrez Gene	9322697