PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475716

Common Name

ARALYDRAFT_475716

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 257aa MW: 27849 Da PI: 6.0227

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475716	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H 475716 82 FSCNYCQRKFYSSQALGGHQNAH 104 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.04E-6	78	109	No hit	No description
PROSITE profile	PS50157	11.427	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRPILDLEVE ASSDSSSSQV ASNLSPVGED YKPILLNLSL SFNNNNLDLE SSSLTLPLSS 60 TSESSNPEQQ QQQQPSVSKR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRAMRMGLA 120 GVFPGRGSSS SYAAATAAAL SCLPLHGSGN GNMTSFRTLG IRAHASSHDV GMTRQTPETI 180 IRNIARFNQG YFGNCIPFYV EDDEAEMLWP GSFRQATDAA AVEAGNDNLG ERKMDFLDVK 240 QAVDMESSLP DLTLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475716

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC026480	0.0	AC026480.6 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete sequence.
GenBank	AF361630	0.0	AF361630.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBank	AK230229	0.0	AK230229.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-05-K17.
GenBank	AK230232	0.0	AK230232.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-06-L22.
GenBank	AK230250	0.0	AK230250.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-17-O17.
GenBank	AY056067	0.0	AY056067.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBank	AY058087	0.0	AY058087.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020865642.1	0.0	zinc finger protein 4
Swissprot	Q39263	1e-144	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	D7KT53	0.0	D7KT53_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__846__AT1G66140.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6672	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-118	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	475716
Entrez Gene	9323073

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]