PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475739
Common NameARALYDRAFT_475739
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 250aa    MW: 28767.7 Da    PI: 8.4885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475739genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd ll +++ ++G   W+ ++ + g++R++k+c++rw++yl
           475739 10 KGTWTAEEDSLLRQCIDKYGESKWHQVPLRAGLNRCRKSCRLRWLNYL 57
                     799*******************************************97 PP
2Myb_DNA-binding46.86.8e-1563108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++  +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l
           475739  63 RGKFCSDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDIKNYWNTHL 108
                      7888899***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.917161IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-20659IPR009057Homeodomain-like
SuperFamilySSF466899.56E-287104IPR009057Homeodomain-like
SMARTSM007174.5E-14959IPR001005SANT/Myb domain
PfamPF002491.0E-141057IPR001005SANT/Myb domain
CDDcd001673.12E-91257No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2360111IPR009057Homeodomain-like
PROSITE profilePS5129419.33762112IPR017930Myb domain
SMARTSM007171.8E-1362110IPR001005SANT/Myb domain
PfamPF002491.8E-1363108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENSFKGLRK GTWTAEEDSL LRQCIDKYGE SKWHQVPLRA GLNRCRKSCR LRWLNYLKPS  60
IKRGKFCSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDI KNYWNTHLSK KHDELCCKTK  120
MINRNITSHP TTSAQKIDVL KPRPRSFSDK NSCNDLNVLP KVDVVPSWFG LNNNNVCERS  180
ITCNKDEQKD KLTNNLMDGD NTWWESLLEE SQEADLFGPE ATITEKGETS AFDVSKLWGL  240
FHEETVELN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2281135109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap475739
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0083780.0AY008378.1 Arabidopsis thaliana putative transcription factor MYB113 mRNA, complete cds.
GenBankAY5195660.0AY519566.1 Arabidopsis thaliana MYB transcription factor (At1g66370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887030.10.0transcription factor MYB113
SwissprotQ9FNV91e-147MY113_ARATH; Transcription factor MYB113
TrEMBLD7KTP00.0D7KTP0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__869__AT1G66370.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-143myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]