PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475744
Common NameARALYDRAFT_475744
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 247aa    MW: 28491.6 Da    PI: 8.8691
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475744genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.47.8e-3251140298
  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
             +fqrlw+eeDeiv+LqG+i+f++ tgksp+dd ++f+efvkk isf++s +q++ Kir+LK+  k+ ++k        fs++hdqk+f+l+k+iWg+
  475744  51 YFQRLWNEEDEIVMLQGIIKFEDVTGKSPFDDSHGFIEFVKKFISFEASVHQYTGKIRQLKRL-KGTKRK------SGFSEAHDQKCFKLAKSIWGT 140
             8***********************************************************974.444444......59*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-2352139IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
EEFSGSSGKV QPSEMKRRRE GTSTDVTSKR AKKVSAEDEK KKMGECTKKQ YFQRLWNEED  60
EIVMLQGIIK FEDVTGKSPF DDSHGFIEFV KKFISFEASV HQYTGKIRQL KRLKGTKRKS  120
GFSEAHDQKC FKLAKSIWGT KETAKKTDLF SSPNGKMVEE DDVDVTNSDW FENSFLLPLI  180
ESLGVDSVKH KWSVVPMEAK KKIEERLELL EADEGECKKI KETLKIKKRE CLKQKTDFLN  240
EVIDVMT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00214DAPTransfer from AT1G66420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap475744
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0206650.0AC020665.6 Arabidopsis thaliana chromosome 1 BAC T27F4 genomic sequence, complete sequence.
GenBankAC0740250.0AC074025.1 Arabidopsis thaliana chromosome 1 BAC F28G11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176815.11e-137DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ9C5171e-138STKLE_ARATH; Probable transcription factor At1g66420
TrEMBLD7KTQ11e-178D7KTQ1_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__874__AT1G66420.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.11e-124DNA-binding storekeeper protein-related transcriptional regulator