PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475908

Common Name

ARALYDRAFT_475908

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

BBR-BPC

Protein Properties

Length: 265aa MW: 30051.2 Da PI: 10.1274

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475908	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	44	8.1e-14	1	112	1	102
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernl.alsekkaav.........aerd........maflqrdkalaernkalverd 78 md+dg +rn+gyyep+ +++ nlg+ql+ si +r++k+ +++ l +++++++++ ++rd m++ ++l++ +rd 475908 1 MDEDGLSNRNWGYYEPS-QFRPNLGFQLIPSIINRNEKPflspQNQSLnNFITPSNVYrgdsssvmsYPRDytlfdapfMSY----SWLNQ------HRD 89 9*************9.*******************99444431477777777665555555566699998777777....99999......9 PP GAGA_bind 79 nkllalllvenslasalpvgvqvl 102 +k++++++++ s + ++p++ +v+ 475908 90 SKFFSNVPTNASRM-THPMQPEVV 112 ********877644.444444444 PP
2	GAGA_bind	269.7	1.5e-82	106	265	132	299
GAGA_bind 132 lealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGW 230 +++++ +++e+ ++++++ +qr+ k+kk+kk k+ +++++++ ers +ks+++v+ngvs+D+++lPvPvCsCtG+++qCY+WG+GGW 475908 106 PMQPEVVGEVDESLKRRHCSGGQRG-PLKVKKEKKLKD--------NNMPRVQrERSPLLRKSVEMVINGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGW 196 5567777788888888888866654.345555555555........455555558999**************************************** PP GAGA_bind 231 qSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299 qSaCCtt++SvyPLP+stkrrgaRiagrKmSqgaf+k+LekL+++G+d+snp+DLk+hWAkHGtnkfvt 475908 197 QSACCTTNVSVYPLPISTKRRGARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVT 265 ******************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.2E-140	1	265	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.7E-75	109	265	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDEDGLSNRN WGYYEPSQFR PNLGFQLIPS IINRNEKPFL SPQNQSLNNF ITPSNVYRGD 60 SSSVMSYPRD YTLFDAPFMS YSWLNQHRDS KFFSNVPTNA SRMTHPMQPE VVGEVDESLK 120 RRHCSGGQRG PLKVKKEKKL KDNNMPRVQR ERSPLLRKSV EMVINGVSMD IGGLPVPVCS 180 CTGMPQQCYR WGCGGWQSAC CTTNVSVYPL PISTKRRGAR IAGRKMSQGA FRKVLEKLSS 240 DGFDFSNPID LKSHWAKHGT NKFVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475908

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012563	0.0	AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBank	BT022117	0.0	BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020865913.1	0.0	protein BASIC PENTACYSTEINE3
Refseq	XP_020865914.1	0.0	protein BASIC PENTACYSTEINE3
Swissprot	Q9C9X6	1e-166	BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBL	D7KVR8	0.0	D7KVR8_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.2__1038__AT1G68120.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15347	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	1e-167	basic pentacysteine 3

Link Out ? help Back to Top
Phytozome	475908
Entrez Gene	9324701