PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475938
Common NameARALYDRAFT_475938
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 310aa    MW: 34400.4 Da    PI: 8.1492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475938genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.4e-15226250226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ktelC+ +++tGtC+yGd C+FaHg
   475938 226 KTELCNKWQETGTCPYGDHCQFAHG 250
              9***********************8 PP
2zf-CCCH19.91.3e-06263288126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              ykte Cr  +++  C+yG rC+F H+
   475938 263 YKTEVCRMVLAGDNCPYGHRCHFRHS 288
              9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18219257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-11221256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23224252IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9224251IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-12226250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9258293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-13258291IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272262290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MENKIAPFSY SGSSAGDSSC SGVVSSSLFS DQLYKSTRNI MQQRQDMVNR EALCYTRLHE  60
ASLEAEALRL ENTELRSMNR HLKTELNSLI RSSIQNRFDL RSPLRMLSNL SIGGNDADEV  120
ENQNQNRTVN RDDVSDESPT SVMENEDLNR SSLPKSISVR SSGYSKASQG GGGAAAQSGK  180
PRGTVTKPGT CGQVSTTQKV YVRGGGKKED QEEEIEVEVY NQGMTKTELC NKWQETGTCP  240
YGDHCQFAHG IKELRPVIRH PRYKTEVCRM VLAGDNCPYG HRCHFRHSLS EQEKLVAAGL  300
KPKSSLKLLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22226291570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap475938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889723.10.0zinc finger CCCH domain-containing protein 15 isoform X1
SwissprotQ9C9F50.0C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLD7KW930.0D7KW93_ARALL; Zinc finger (CCCH-type) family protein (Fragment)
STRINGfgenesh2_kg.2__1068__AT1G68200.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-167C3H family protein