PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

475944

Common Name

ARALYDRAFT_475944

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 195aa MW: 22628.5 Da PI: 6.4188

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
475944	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.9	2.8e-11	83	127	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++E++RR++iN++ + L+ ++P++ s+K++ a+ Le+ +eYIksL+ 475944 83 MMEKKRRKEINNKVDILQGMMPNR----SPKPDLASKLEHIIEYIKSLK 127 79*******************9....8****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.9E-11	74	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	75	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.443	76	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-5	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.57E-9	83	127	No hit	No description
Pfam	PF00010	1.3E-8	83	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEIKNHKEGT HEEEQCSISN IISSFCSENH NELNPLQEIF GAHSSSKPED VTKNSDHEKH 60 GEEQDEESYR MAKRQRSMEY RMMMEKKRRK EINNKVDILQ GMMPNRSPKP DLASKLEHII 120 EYIKSLKYQV DVMYMAYTAT PVYTSPFYAA AQAPCMSPWG YYTPGVPMMP QQNMTYIPQY 180 HQVYETAPPN QTHP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269\|PubMed:23874927, ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	475944

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY735552	0.0	AY735552.1 Arabidopsis thaliana chromosome 1 hypothetical protein AT1G68240 mRNA, complete cds, alternatively spliced.
GenBank	AY924719	0.0	AY924719.1 Arabidopsis thaliana hypothetical protein (At1g68240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889793.1	1e-145	transcription factor bHLH109
Swissprot	Q5XVH0	1e-113	BH109_ARATH; Transcription factor bHLH109
TrEMBL	D7KW98	1e-143	D7KW98_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__1074__AT1G68240.1	1e-144	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	4e-98	bHLH family protein

Link Out ? help Back to Top
Phytozome	475944
Entrez Gene	9323239

Publications ? help Back to Top
Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS ONE, 2013. 8(7): p. e69261 [PMID:23874927] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]