PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476015
Common NameARALYDRAFT_476015
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 131aa    MW: 15403.5 Da    PI: 9.6769
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476015genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.11.6e-1245105363
             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
             + ++ rrk +NRe+ArrsR RK+  ++eL     +L ++Nk L +el++ ++ ++k+  e+
  476015  45 DERKRRRKVSNRESARRSRMRKQRHMDELWSMLVQLINKNKCLVDELSRAREGYEKVIEEN 105
             5578899**********************************************99987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.7E-1038100No hitNo description
SMARTSM003381.4E-1343107IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.38145108IPR004827Basic-leucine zipper domain
PfamPF001701.4E-947105IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.34E-104797No hitNo description
CDDcd147026.18E-154896No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAGFVYNLPC ENPNPKSLFQ TFVDRVPLLN FPATSEDSSR NAEDDERKRR RKVSNRESAR  60
RSRMRKQRHM DELWSMLVQL INKNKCLVDE LSRAREGYEK VIEENMKLRE ENSKSRETIG  120
EIGLNWFPNV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14650RKRRR
25966RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap476015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935281e-149AB493528.1 Arabidopsis thaliana At1g68880 mRNA for hypothetical protein, partial cds, clone: RAAt1g68880.
GenBankAC0116651e-149AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119141e-149AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF4006211e-149AF400621.1 Arabidopsis thaliana transcription factor-like protein bZIP8 mRNA, complete cds.
GenBankBT0248171e-149BT024817.1 Arabidopsis thaliana At1g68880 gene, complete cds.
GenBankCP0026841e-149CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888689.12e-91basic leucine zipper 8
SwissprotQ9CA469e-75BZIP8_ARATH; Basic leucine zipper 8
TrEMBLD7KWW14e-90D7KWW1_ARALL; BZIP transcription factor family protein
STRINGfgenesh2_kg.2__1145__AT1G68880.16e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.14e-77basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]