PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476093
Common NameARALYDRAFT_476093
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 333aa    MW: 37471.4 Da    PI: 6.1916
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476093genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.6e-322983155
  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
             kprl+Wt++LH++F+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
   476093 29 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 83
             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-282784IPR009057Homeodomain-like
SuperFamilySSF466894.66E-152883IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-222984IPR006447Myb domain, plants
PfamPF002498.0E-63182IPR001005SANT/Myb domain
PfamPF143795.4E-23134180IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEINNNANNT NTNNNHKAKM SLVLSTDAKP RLKWTCDLHH KFIEAVNQLG GPNKATPKGL  60
MKVMEIPGLT LYHLKSHLQK YRLGKSMKFD DNKLEAVSSA SENQEPESKN DSRDLRGCSV  120
TEENSNPAKD RGLQITEALQ MQMEVQKKLH EQIEVQRHLQ VKIEAQGKYL QSVLMKAQQT  180
LAGYTSSNLG MDFARTELSR LASMVNRGCP SSSFSELTQV EEEEEAEEGF FWCKKPGNRG  240
ISQLRCSVES SLTSSESSEI KLENDNNLNK SIELPLMEIT SEVITGKKRS LNDVVCVEQQ  300
PLMKRAFEVD DDELLRLSLN SYKKDMETCP NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap476093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295160.0BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865773.10.0myb family transcription factor PHL8 isoform X1
SwissprotF4I2740.0PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLD7KXH00.0D7KXH0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1223__AT1G69580.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]