PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476226
Common NameARALYDRAFT_476226
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23663.6 Da    PI: 8.3507
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476226genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1969124156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rrk+ ++tkeq + Lee F +n++++ +++++LA+ l+L++rqV vWFqNrRa+ k
    476226  69 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 124
               79999*************************************************98 PP
2HD-ZIP_I/II109.91.8e-3570158190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLEesF ++++L+p++K++la+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rL+ eveeLr +
       476226  70 RKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELR-A 158
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-2054125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-1959124IPR009057Homeodomain-like
PROSITE profilePS5007117.94566126IPR001356Homeobox domain
SMARTSM003892.2E-1768130IPR001356Homeobox domain
PfamPF000461.8E-1669124IPR001356Homeobox domain
CDDcd000865.28E-1669127No hitNo description
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003402.9E-16126169IPR003106Leucine zipper, homeobox-associated
PfamPF021833.0E-9126160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MALSPNSSSL DLTISIPSFS PSPSLGDHDH GVRDLDINQT PKTEEDREWI MIGATPHVNE  60
DDSNPGGRRR KKLRLTKEQS HLLEESFIQN HTLTPKQKKD LATFLKLSQR QVEVWFQNRR  120
ARSKLKHTEM ECEYLKRWFG SLKEQNRRLQ IEVEELRALK PSSTSALTMC PRCERVTDAA  180
DNDSNAVQEG AVLSSRSRMT ISSSSSLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674GRRRKKLRL
26773RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap476226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758370.0AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBankAK1759650.0AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBankEU3391860.0EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889607.11e-153homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-126ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLD7KYG31e-152D7KYG3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1356__AT1G70920.11e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.11e-117homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]