PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476281
Common NameARALYDRAFT_476281
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 148aa    MW: 16059.7 Da    PI: 4.6493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476281genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-161160154
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
            s+ykG+r++k +g+Wv+eIr+p +   r+r +lg+f tae+Aa a++ a  +l+
  476281 11 SKYKGIRRRK-WGKWVSEIRVPGT---RQRLWLGSFSTAEGAAVAHDVAFYCLH 60
            89*****998.**********943...5********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-161164IPR016177DNA-binding domain
CDDcd000184.53E-251173No hitNo description
PfamPF008471.3E-81158IPR001471AP2/ERF domain
SMARTSM003805.5E-261279IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-241273IPR001471AP2/ERF domain
PRINTSPR003675.3E-91324IPR001471AP2/ERF domain
PRINTSPR003675.3E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDSRAGETDQ SKYKGIRRRK WGKWVSEIRV PGTRQRLWLG SFSTAEGAAV AHDVAFYCLH  60
RLSSLDDEAF NFPRLLPTSL ASNTSPKSIQ KAASDAGMAV DAGFNINNDS AVSGSGGCED  120
RSSMAANMEE DNELSISVYD YLEDDLV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap476281
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887377.11e-106ethylene-responsive transcription factor ERF020
SwissprotQ9C9I85e-88ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLD7KYW31e-105D7KYW3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1411__AT1G71520.11e-105(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-90ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]