PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476410
Common NameARALYDRAFT_476410
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 293aa    MW: 32204.8 Da    PI: 8.6847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476410genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l+ ++ ++G+g Wk I r         +R+  ++k++w+++
           476410  5 KLKWTGEEEEALLAGIGKHGPGKWKNILRDPEfadqlIHRSNIDLKDKWRNL 56
                     689*********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.715162IPR017930Myb domain
SuperFamilySSF466899.33E-15360IPR009057Homeodomain-like
SMARTSM007172.4E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12456IPR009057Homeodomain-like
CDDcd116608.71E-19756No hitNo description
PfamPF139212.4E-6858No hitNo description
SMARTSM005267.1E-17122187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.32E-14122210IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-10123207IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.615124198IPR005818Linker histone H1/H5, domain H15
PfamPF005388.1E-8126195IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGNQKLKWTG EEEEALLAGI GKHGPGKWKN ILRDPEFADQ LIHRSNIDLK DKWRNLSVAP  60
GTQGSTNKAR PTKVKEEGPA VATDDITNPP PNTIPTIPPP PNRRILPSEL IPDEKSNIVV  120
DAKNVPRYDG MIFEALSALA DGNGSDVSSI FHFIEPRHEV PPNFRRILST RLRRLAAQSK  180
LEKVSTFKSL QNFYKIPDPS GTKKPAPKTK ETHTKLRQAN NQASAISLQM IEEAAITAAC  240
KVVEAENKID VAKLAAEEFE KMTKLAEETG KLLLIANEMH EQCSGGEPML LA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap476410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3729253e-98AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891089.10.0telomere repeat-binding factor 5 isoform X1
SwissprotF4IEY41e-161TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLD7KR330.0D7KR33_ARALL; DNA-binding family protein
STRINGfgenesh2_kg.2__1540__AT1G72740.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.11e-157MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]