PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

476427

Common Name

ARALYDRAFT_476427

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 205aa MW: 23497.6 Da PI: 6.1176

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
476427	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6.4e-40	13	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 aCaaCk++r+kC+k+C lapyfp++++++f n+hklFG+sn++k+lk ++e++r++am+ l+y+A+ara dPv G++++i +l++++e ++ael+ +++++ 476427 13 ACAACKYQRKKCKKNCLLAPYFPQDRSNQFLNAHKLFGVSNITKMLKGIEESQRDIAMENLIYHANARALDPVGGVYSTICDLKRKIEIVQAELNFTRQQI 113 7***********************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.058	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-37	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSLSTLSGGS TTACAACKYQ RKKCKKNCLL APYFPQDRSN QFLNAHKLFG VSNITKMLKG 60 IEESQRDIAM ENLIYHANAR ALDPVGGVYS TICDLKRKIE IVQAELNFTR QQIAMCRSLA 120 QQQQRQRQDL PYGCYSYEHL LQQDEDEYVN VDGFDLQNMQ QHQEMQQQQQ PNPINYEMFL 180 EMPEQTSKVK LEEVKISDQG ETIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-26	9	113	7	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-26	9	113	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	476427

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473864	0.0	AB473864.1 Arabidopsis thaliana ASL31 mRNA for ASYMMETRIC LEAVES2-like 31 protein, complete cds.
GenBank	AC008017	0.0	AC008017.2 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888900.1	1e-152	LOB domain-containing protein 7
Swissprot	Q9SSM9	1e-109	LBD7_ARATH; LOB domain-containing protein 7
TrEMBL	D7KR59	1e-150	D7KR59_ARALL; LOB domain family protein
STRING	fgenesh2_kg.2__1557__AT1G72980.1	1e-151	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15466	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	1e-94	LOB domain-containing protein 7

Link Out ? help Back to Top
Phytozome	476427
Entrez Gene	9323530