PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

47661

Common Name

MICPUCDRAFT_47661

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 278aa MW: 28933.9 Da PI: 5.2493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
47661	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	98	147	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++++ rE+ RR+ +N++f L ll ++ + + +Ka+i+++A I+sL 47661 98 KVKKSRREKLRREALNDRFMGLSALLDPS---KPPATDKATIVTEAAAVISSL 147 567899********************9...8888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.211	96	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	98	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-10	98	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-8	98	152	No hit	No description
SuperFamily	SSF47459	1.44E-10	98	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-6	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTSAPGANAG ESIAPAGAVG VKKEETAVNK EDSGDWLADI FDAVDEDAIT SLEMGDVALP 60 QDILAKVDEG SASAVAAGKK EEGVGKRGRG EGGEELSKVK KSRREKLRRE ALNDRFMGLS 120 ALLDPSKPPA TDKATIVTEA AAVISSLRKQ LAELGENLEK LTASNEALET EKNALASDKA 180 SLMRDKVALQ QEKHKLEHQL HVFMGSMPFA SPPPGMMVMH HPPGAPPPGA AIVSSTASGA 240 KVGGHPGGMM PMMWSFPPLV VQSTTAEEDA KLRAPAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	109	RREKLRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003059710.1	0.0	predicted protein
TrEMBL	C1MWY1	0.0	C1MWY1_MICPC; Predicted protein
STRING	XP_003059710.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5460	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	47661
Entrez Gene	9685439

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]