PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476668
Common NameARALYDRAFT_476668
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 95aa    MW: 10980.3 Da    PI: 9.554
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476668genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-071154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W+ +a+ +g g+t +++k ++
           476668 11 SWTFNQNKMFERALAVYDKDtpdRWHNVAKAVG-GKTVEEVKRHY 54
                     6999999***********99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-5860IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-121165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-41159IPR009057Homeodomain-like
CDDcd001671.96E-51254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASNSRSSIS SWTFNQNKMF ERALAVYDKD TPDRWHNVAK AVGGKTVEEV KRHYDILVED  60
LINIETGRVP LPNYKTFESN SRGVNDFDTR KMKNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-32195190RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap476668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3953461e-128DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889017.24e-66protein RADIALIS-like 6
SwissprotQ1A1731e-64RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD7KSM01e-64D7KSM0_ARALL; Myb family transcription factor (Fragment)
STRINGfgenesh2_kg.2__1798__AT1G75250.22e-65(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-67RAD-like 6