PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476884
Common NameARALYDRAFT_476884
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 248aa    MW: 27211.8 Da    PI: 4.9901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476884genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-194494155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ ++g
  476884 44 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKG 94
            79*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-2244104No hitNo description
PfamPF008475.3E-134494IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2245103IPR016177DNA-binding domain
SMARTSM003802.8E-3645108IPR001471AP2/ERF domain
PROSITE profilePS5103223.14345102IPR001471AP2/ERF domain
PRINTSPR003672.5E-104657IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3146103IPR001471AP2/ERF domain
PRINTSPR003672.5E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTESSITSVK QSSPVPEEEV DHHHHHHQEE SHRNNNKKRV RPDPGYRGVR MRTWGKWVSE  60
IREPRKKSRI WLGTFSTPEM AARAHDAAAL TIKGTSAVLN FPELATYLPR PASSSPRDVQ  120
AAAAVAAAMD FSSSSSSLIV SDPTTVVVPA ETHLSSSSYS TSTSSSLSPS SEEAASTAEE  180
LSEIVELPSL ETSYDESWSE FVYVDSAYPP SSPWYINNCY SFYYHSDENG ISMGEPFDSS  240
NFGPLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17461021572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap476884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042600.0AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608750.0AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889129.11e-180ethylene-responsive transcription factor ERF037
SwissprotO806541e-124ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLD7KUG71e-178D7KUG7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__2014__AT1G77200.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.13e-99ERF family protein