PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476959
Common NameARALYDRAFT_476959
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29157.1 Da    PI: 5.1265
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476959genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.8e-23958150
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
            krie ++nrq+tfskR++g++KKA+ELS+LCd++ a+++fs++++l  +s
  476959  9 KRIEKNTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFS 58
            79*****************************************9997765 PP
2K-box19.53.9e-081251931179
   K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
             +++ e+l+qe+ +L+++++  ++e+R++  + +   s++e++  e++L + l+++ +++++ll+++ e 
  476959 125 NTDVEELEQEVCRLQQQLQISEEELRKFEPDPMRFTSMEEIEACETHLINTLTSVVQRREHLLRKSCEA 193
             567899*********************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.086161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-26281IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRVKLELKR IEKNTNRQIT FSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ  60
TRIEDVLARY INLPDQEREN AIVFPDQSKR QAIQNKEYLL RTLEKLKIED DMALQINEPR  120
PEAINTDVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRFT SMEEIEACET HLINTLTSVV  180
QRREHLLRKS CEAPSNQQSM QGILLNDIVE DWGSEAEPKQ AHVMAKSAHQ SNQLSYDLLL  240
QGSNSSSNQN PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-18191192MEF2 CHIMERA
6bz1_B8e-18191192MEF2 CHIMERA
6bz1_C8e-18191192MEF2 CHIMERA
6bz1_D8e-18191192MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap476959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0121280.0BT012128.1 Arabidopsis thaliana At1g77950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889727.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC21e-110AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLD7KV590.0D7KV59_ARALL; Transcription factor
STRINGfgenesh2_kg.2__2089__AT1G77950.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-152AGAMOUS-like 67
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]