PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

477093

Common Name

ARALYDRAFT_477093

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 137aa MW: 15704.2 Da PI: 4.8788

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
477093	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	25.7	3e-08	2	39	9	46
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFk 46 +++d++l+ +isws+++nsf+v++ e ++++vLpk + 477093 2 VVDDPSLDPIISWSKSNNSFIVWNLEGLHREVLPKSIE 39 6899*****************************99654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.07E-7	2	56	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-6	2	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.5E-8	2	54	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MVVDDPSLDP IISWSKSNNS FIVWNLEGLH REVLPKSIEF GKHYLKFMTE LKFYVSFIYF 60 GIVSHLVFVV VDRALEELRG QSNGNLDMSI FFIYVYICKD YISEFGIVSH LVFVVVDRAL 120 EELRGQSNGN LDMSIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	477093

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226945	6e-58	AK226945.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-28-L17.
GenBank	CP002684	6e-58	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	YUP8H12R	6e-58	AC002986.1 Arabidopsis thaliana chromosome 1 YAC YUP8H12R sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D7KVZ6	3e-93	D7KVZ6_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__2223__AT1G79245.1	6e-94	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	3e-14	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Phytozome	477093
Entrez Gene	9325301