PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477966
Common NameARALYDRAFT_477966
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 218aa    MW: 23824.6 Da    PI: 12.2203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477966genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.9e-051601941655
             HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +N +   L +l+P +     +K s   iLe+A++YI+ L+
  477966 160 VNRKVRVLGRLVPGC-----GKQSVPVILEEATDYIQALE 194
             677777788888888.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-9141209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.103144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-7159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MASLISDIEP PTTDLVRRKK RSSVSSAASP STSAASVSGE SHARWRSEKQ QRIYSAKLIQ  60
ALQQVRLNSS AATSSSPTAQ KRGKAVREAA DRALAVSARG RTLWSRAILA NRIKLKFRKQ  120
KRPKTPTKIP SMTTVVNSSN RSRTRRVSVL RLNKKNIPDV NRKVRVLGRL VPGCGKQSVP  180
VILEEATDYI QALEMQVRAM NSLVQLLSSY GSAPPPI*
Functional Description ? help Back to Top
Source Description
UniProtbHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap477966
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205800.0AC020580.11 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence.
GenBankAY0812880.0AY081288.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds.
GenBankAY0887440.0AY088744.1 Arabidopsis thaliana clone 9391 mRNA, complete sequence.
GenBankAY0933900.0AY093390.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888482.11e-153transcription factor bHLH148
RefseqXP_020888484.11e-153transcription factor bHLH148
SwissprotQ9C8Z91e-106BH148_ARATH; Transcription factor bHLH148
TrEMBLD7L5J91e-151D7L5J9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__667__AT3G06590.11e-152(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61571318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.25e-97bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sukweenadhi J, et al.
    Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress.
    Microbiol. Res., 2015. 172: p. 7-15
    [PMID:25721473]