PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

477978

Common Name

ARALYDRAFT_477978

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 172aa MW: 19684.2 Da PI: 5.8271

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
477978	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.7	1.8e-19	4	50	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y + 477978 4 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF 50 6788899*********************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.446	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-22	1	78	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.1E-22	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-23	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-10	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-10	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MEKVQDTNTK QVTFSKRRLG LFKKASELAT LCNAEVGIVV FSPGNKPYSF GKPNFDLIAE 60 RFKNEFEEEE EADSCETSGY SRGKRARQEK KICKRLNSII EEAEAEKKHG EDLHKWLESA 120 QQDRFNKPIE ELTLEELKEF EAKIQETRCG IQSNINHMQA SSSLMFLSKD N*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	477978

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC036106	0.0	AC036106.6 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	DQ056634	0.0	DQ056634.1 Arabidopsis thaliana MADS-box family protein (At3g66656) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884601.2	1e-123	agamous-like MADS-box protein AGL29
Swissprot	O64703	2e-58	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	D7L5Y2	1e-122	D7L5Y2_ARALL; MADS-box family protein
STRING	fgenesh2_kg.3__679__AT3G66656.1	1e-123	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G66656.1	1e-102	AGAMOUS-like 91

Link Out ? help Back to Top
Phytozome	477978
Entrez Gene	9318553

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]