PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

479433

Common Name

ARALYDRAFT_479433

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 276aa MW: 31469.6 Da PI: 9.4945

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
479433	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.3	4.9e-17	127	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f k +++s+v+ +l lp +f+++h+ k ++ ++tl de+ ++ vk+ +k++ l++GW++F+ +++L +gD vvF+l+ r+ f +v ++r 479433 127 FTKPMLQSHVTGGFWLGLPLPFCKAHMPK--RDEMMTLVDEEDEESMVKYLAEKNG----LSGGWRGFAIDHQLVDGDAVVFQLITRTMF--KVYIIR 216 899*********************844..6679***********666666....**********************998777..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.7E-21	118	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-24	120	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.42E-25	125	216	No hit	No description
PROSITE profile	PS50863	10.969	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.9E-15	127	216	IPR003340	B3 DNA binding domain
SMART	SM01019	5.3E-22	127	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MVESELSYEQ IRLKRVEENK KRMGELNLNK LAQSLRVSSS SSKPSPAKPR TMRIPVDFSE 60 VRRSSRAKGP PPSYKEFGLE PLERRPRRSS QRRDLLNRVY ASDDARMYAF DRAEKLQSSL 120 DPEFPSFTKP MLQSHVTGGF WLGLPLPFCK AHMPKRDEMM TLVDEEDEES MVKYLAEKNG 180 LSGGWRGFAI DHQLVDGDAV VFQLITRTMF KVYIIRVNED ANKDSDGNEE DEDNDNELNK 240 KQKENVSEAR QLRSSGKRKR GGNNVSNLSL PLVIS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	479433

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493621	0.0	AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBank	DQ487561	0.0	DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887707.1	0.0	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-160	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	D7L985	0.0	D7L985_ARALL; DNA binding protein
STRING	fgenesh2_kg.3__2134__AT3G19184.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-133	B3 family protein

Link Out ? help Back to Top
Phytozome	479433
Entrez Gene	9319232

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]