PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479466
Common NameARALYDRAFT_479466
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-PHD
Protein Properties Length: 725aa    MW: 80545.4 Da    PI: 4.4625
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479466genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.21.5e-14617662853
               -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
               t+  +++L   F++nryp+++++e LAk+l++t +qV +WF+NrR 
    479466 617 TDPKTQRLYISFQENRYPDKATKESLAKELQMTVTQVNNWFKNRRS 662
               5667899999***********************************7 PP
2PHD40.37.3e-14262317151
             SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
     PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
             +C+ Cg+     +++++lCdg C++ fH++Cl+++l++e++p +  +wlC+ C++k
  479466 262 FCAKCGSkdLSVDNDIILCDGfCDRGFHQYCLEPPLRKEDIPPDdeSWLCPGCDCK 317
             699***955445********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-14252317IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-13258316IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.208260317IPR019787Zinc finger, PHD-finger
SMARTSM002491.4E-9262315IPR001965Zinc finger, PHD-type
CDDcd155042.97E-27262314No hitNo description
PfamPF006282.4E-11262317IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590263314IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.4E-14597661IPR009057Homeodomain-like
PROSITE profilePS5007113.183607667IPR001356Homeobox domain
SMARTSM003892.5E-11609671IPR001356Homeobox domain
SuperFamilySSF466895.43E-14615663IPR009057Homeodomain-like
PfamPF000465.1E-12617662IPR001356Homeobox domain
CDDcd000862.47E-13617661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MHRAASKRVT RSSGSGLKQT NVEINPTVDK VSEQGQNSEA GSHMPNDANE NGHLHHDIME  60
NGKGNEQLKP TPQTGKKRSS TNTKISGSHR ELVIGLPCRG QFEIHRSRSS TSSKRLGGGG  120
ERNVLFSSHK GAQRSKEDAG SSSVAANSTP VGRPKKRNKT MKKGEVREDD EYTRIKKKLR  180
YFLNRISYEQ NLIDAYSLEG WKGSSLEKIR PEKELERATK EILRRKLKIR DLFQHLDTLC  240
AEGSLPESLF DSDGEISSED IFCAKCGSKD LSVDNDIILC DGFCDRGFHQ YCLEPPLRKE  300
DIPPDDESWL CPGCDCKDDS LDLLNDSLGT KLLVSDSWEK IFPEAAAALA GGGQNLDCDL  360
PSDDSDDEEY DPDGLNDNEN DEDGSDDNEE SENEDDSSDE SESTSASDKM IESFKEGKDI  420
MKDIMALPSD DSEDDDYDPD APTCDEDKES SNSDCTSDYE DLETSFKGDE SNQQAEDTPF  480
EDPGRQTSQL PCDAILESDV GLDDGPAGVS RRRNVERLDY KKLYNEEYDN VPTSSSDDDD  540
WDKTARMGKE DSESEDEGDI VPLKQSSNAE DHTSKKPRRK SKRTDKKDTL EVPQECPGEN  600
GGSGEIEKSS SSANKQTDPK TQRLYISFQE NRYPDKATKE SLAKELQMTV TQVNNWFKNR  660
RSSINSKPLV SEENVEKLKT GKEGECETSV AGSSVQTMET ESVAENKSRA SESTNTGSRK  720
RRRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179RIKKKLR
2574582KKPRRKSKR
3718722RKRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMap479466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171050.0AK117105.1 Arabidopsis thaliana At3g19510 mRNA for putative homeobox protein HAT3.1, complete cds, clone: RAFL16-64-G01.
GenBankBT0059650.0BT005965.1 Arabidopsis thaliana At3g19510 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888181.10.0homeobox protein HAT3.1
RefseqXP_020888182.10.0homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLD7L9Z90.0D7L9Z9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2167__AT3G19510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]