PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

479664

Common Name

ARALYDRAFT_479664

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 1132aa MW: 127503 Da PI: 8.6548

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
479664	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.7e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ 479664 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.31E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-5	46	82	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	3.34E-5	47	89	No hit	No description
SMART	SM01135	4.7E-61	608	709	IPR033471	DIRP domain
Pfam	PF06584	6.1E-30	608	707	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1132 aa Download sequence Send to blast
MAPSRSKKSK YKKKPRAKAI SPHKDEDSMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQENNEGIE TPRSAPKRSR VKSSDNPSIG LEGLSDRLQF RSSSGFMPSL KKRRTETVPR 180 AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST 240 KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNGDYSGG 300 RNDLMHGEGS SAVEKQQKGR TYYRRRLGIK EEDAKEACSG TDEAPSLGAP DEKFEPERDG 360 KSLKFTYKVS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQAEEKRAGK 420 AYVSDFKGTD PASMSKSSSL RNSKQRRSGT NDLCDTEPER KSPSSSLIRK RRQKVLPAKV 480 REDVLKDELA ASSKVIEPCN NKGIGEENKP VGRGKRSASI RNSHEKKSVK PHDRTSSSNN 540 IVEEDESAPS NAVIKKQVNL PTKVRSRRKI VTEKPLTIDD GKISETLEKF SHYTSSFRAR 600 RWCLFEWFYS AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL 660 KEEKEKLYLY RDSVRKHYDE LNTGMREGLP MDLARPLNVS QRVISLHPKS REIHDGSVLT 720 VDHCRYRIQF DHPELGVEFV KDTECMPLNP LENMPASLAR HYAFSNYNIQ NPVEEKMHER 780 AKESMLEGYS KLSCETGRLL PSPNYNVSNS LKQEKVDISS SNPQAQDGVD EALDLQLFNS 840 QPSSIGHIQA READVQALSE LTRALDKKEL VLRELKCMND EVVESQKDGH NALKDSESFK 900 KQYAAVLFQL SEINEQVSLA LLGLRQRNTY QENVPYASTK RMNKSGEPDG QLTYVDNYVS 960 DTNGFHVSEI VESSRIKARK MVYRAVQALA LLRKDENNNV NMEEAIDFVN NQLSIDQTEG 1020 SSVQQTQGAQ DQRLPSTPNP PSSTPANDSH LNPPDQNDLQ IPSELVSRCM ATLLMIQKCT 1080 ERQFPPSEVA QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP S*

Sequence ? help Back to Top

Protein Sequence Length: 1132 aa Download sequence Send to blast

MAPSRSKKSK YKKKPRAKAI SPHKDEDSMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGIE TPRSAPKRSR VKSSDNPSIG LEGLSDRLQF RSSSGFMPSL KKRRTETVPR  180
AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST  240
KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNGDYSGG  300
RNDLMHGEGS SAVEKQQKGR TYYRRRLGIK EEDAKEACSG TDEAPSLGAP DEKFEPERDG  360
KSLKFTYKVS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQAEEKRAGK  420
AYVSDFKGTD PASMSKSSSL RNSKQRRSGT NDLCDTEPER KSPSSSLIRK RRQKVLPAKV  480
REDVLKDELA ASSKVIEPCN NKGIGEENKP VGRGKRSASI RNSHEKKSVK PHDRTSSSNN  540
IVEEDESAPS NAVIKKQVNL PTKVRSRRKI VTEKPLTIDD GKISETLEKF SHYTSSFRAR  600
RWCLFEWFYS AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL  660
KEEKEKLYLY RDSVRKHYDE LNTGMREGLP MDLARPLNVS QRVISLHPKS REIHDGSVLT  720
VDHCRYRIQF DHPELGVEFV KDTECMPLNP LENMPASLAR HYAFSNYNIQ NPVEEKMHER  780
AKESMLEGYS KLSCETGRLL PSPNYNVSNS LKQEKVDISS SNPQAQDGVD EALDLQLFNS  840
QPSSIGHIQA READVQALSE LTRALDKKEL VLRELKCMND EVVESQKDGH NALKDSESFK  900
KQYAAVLFQL SEINEQVSLA LLGLRQRNTY QENVPYASTK RMNKSGEPDG QLTYVDNYVS  960
DTNGFHVSEI VESSRIKARK MVYRAVQALA LLRKDENNNV NMEEAIDFVN NQLSIDQTEG  1020
SSVQQTQGAQ DQRLPSTPNP PSSTPANDSH LNPPDQNDLQ IPSELVSRCM ATLLMIQKCT  1080
ERQFPPSEVA QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	479664

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887223.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020887224.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020887225.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	D7L0S7	0.0	D7L0S7_ARALL; Always early protein 3
STRING	fgenesh2_kg.3__2365__AT3G21430.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	479664
Entrez Gene	9319373

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]