PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479836
Common NameARALYDRAFT_479836
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 128aa    MW: 14502.9 Da    PI: 5.2903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479836genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-19252255
     AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr ++ +g+++AeIrd      ++ +r++lg+f+tae+Aa+a+++a+ +++g
  479836  2 KYRGVRKRP-WGKYAAEIRD----SaRHgARVWLGTFDTAEDAARAYDRAAFAMRG 52
            8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-17261No hitNo description
PROSITE profilePS5103224.039260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32262IPR001471AP2/ERF domain
SMARTSM003804.4E-36266IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23262IPR016177DNA-binding domain
PfamPF008472.3E-14252IPR001471AP2/ERF domain
PRINTSPR003676.5E-12314IPR001471AP2/ERF domain
PRINTSPR003676.5E-122642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
VKYRGVRKRP WGKYAAEIRD SARHGARVWL GTFDTAEDAA RAYDRAAFAM RGQRAILNFP  60
HEYQMMKDGP NGSRENVVAS SSSEYRGGGG GDRKEVIEFE YLDDSLLEEL LDYGENYNQD  120
TWNDANR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-37210614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap479836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-150AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAY5608471e-150AY560847.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g23220) mRNA, complete cds.
GenBankAY9741961e-150AY974196.1 Arabidopsis thaliana clone At3g23220 AP2/EREBP transcription factor mRNA, complete cds.
GenBankBT0288901e-150BT028890.1 Arabidopsis thaliana unknown protein (At3g23220) mRNA, complete cds.
GenBankCP0026861e-150CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888865.14e-90ethylene-responsive transcription factor ERF095
SwissprotQ9LTC62e-49ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLD7L3933e-88D7L393_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__2537__AT3G23220.15e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-38ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]