PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479983
Common NameARALYDRAFT_479983
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 427aa    MW: 48074.6 Da    PI: 8.8672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479983genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-18105151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W++I++++  gR +kqc++rw+++l
           479983 105 KGQWTAEEDRKLIRLVRQHGERKWALISEKLE-GRAGKQCRERWHNHL 151
                      799*****************************.*************97 PP
2Myb_DNA-binding47.63.9e-15158199245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE++ lv+ + + G++ W+ Ia+ ++ gRt++++k++w+
           479983 158 DGWSEEEEKVLVESHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 199
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.344100155IPR017930Myb domain
SuperFamilySSF466896.36E-29102198IPR009057Homeodomain-like
SMARTSM007171.3E-16104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-27106159IPR009057Homeodomain-like
CDDcd001671.44E-15108151No hitNo description
PfamPF139211.2E-19108166No hitNo description
PROSITE profilePS5129415.649156206IPR017930Myb domain
SMARTSM007172.3E-13156204IPR001005SANT/Myb domain
CDDcd001673.25E-10160202No hitNo description
Gene3DG3DSA:1.10.10.603.8E-19160204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEDRRLVHGA VPPLTAVERF LYGQKNDVLC SKKKECSRDR PIVKTKMSIE TRSDNKENTT  60
FGPTREKHLV LNGGNRSPIG ELVARSAARD YQNSPKKRSY KNLIKGQWTA EEDRKLIRLV  120
RQHGERKWAL ISEKLEGRAG KQCRERWHNH LRPNIKKDGW SEEEEKVLVE SHMRIGNKWA  180
EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK HKRESNADNN DTDVSPSAKR PCILQDYIKS  240
IGSNDINKNN DENTISVLST PNLDQIYSDG DSASSMLGDP YDEELVYLQN IFANHPISLE  300
NIGLSQTSDE VTQSSATGFM TKNPKPNLHN NVGTHHQEAA ITAPANTPHL ASDIYLSYLL  360
NGTTPSYSDT HFPSSSSSTS STTVEHGGRN EFLEPQANST SERREMDLIE MLSGSIQGSN  420
ICFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-431032052104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-431032052104C-Myb DNA-Binding Domain
1msf_C2e-431032052104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap479983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719780.0AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887723.10.0myb-like protein Q
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLD7L5780.0D7L578_ARALL; MYB119
STRINGfgenesh2_kg.3__2684__AT5G58850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]