PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480130
Common NameARALYDRAFT_480130
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 526aa    MW: 59525 Da    PI: 6.7295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06160182427
              ---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
              ++C++f + G+Ck+G++C++ Hg+
   480130 160 KICHYFNK-GFCKHGNNCRYFHGQ 182
              68******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.662156183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5158181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-5160182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164412.173211294IPR025605OST-HTH/LOTUS domain
PfamPF128722.6E-15211290IPR025605OST-HTH/LOTUS domain
SuperFamilySSF549283.59E-5345405IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MNFTESMNVV HNRIQQLEPE NASKIIGYLL LMQDNGNRDM IRLAFCPDSV MRSVINCVKY  60
ELAKNAHHYH SPPSDHIPTH KFGSFTGSSP LSVSVSPPVK TGFWENSTEM DTLQNNLQFL  120
NFEDSLTSPE FSNGFFSQDR QCLPLRTSRR SPSLPEFPVK ICHYFNKGFC KHGNNCRYFH  180
GQIIPERESF ALMFNPNNNL SEEEHVVSPV SLEKLEGEII ELLKARRGAP ISIASLPMMY  240
SETYGRTLQA EGYLTESQRH GKAGYSLTKL LARLKNTIRL IDRPHGQHSV ILAEDASKFV  300
EYTGERNEHG AILAGSRQIY LTFPAESSFT EHDVSTTLPH SDIMFGFVTF ACTETVKLIL  360
AKGNPHFICG ARVLVKPYRE KSRSSRYLDN NKPLHGMRYG SQFIDRDLEI NALPPRGSES  420
SRLLRKPFLS EPEQSVSKSL PTNYSYLGFS SDDFKLTSNA EQEEQAERLS YLLDYLNTED  480
NVMNITTNYR DNDRRTHCES LDSQVLNLPD SPFSSLSGKE ISTVT*
Functional Description ? help Back to Top
Source Description
UniProtPossesses ribonuclease activity in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap480130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4293800.0AY429380.1 Arabidopsis thaliana At2g05160 mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888991.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 18
SwissprotQ9SJ410.0C3H18_ARATH; Zinc finger CCCH domain-containing protein 18
TrEMBLD7L8M70.0D7L8M7_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.3__2831__AT2G05160.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM368522
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]