PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

480521

Common Name

ARALYDRAFT_480521

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 112aa MW: 13254.3 Da PI: 7.9543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
480521	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.3	1.7e-21	12	81	4	75
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 +C + +++C+++C +a+yfp + +++ +++lFG+ n++k+++++pee+++++++s+++e++a+++dP+y 480521 12 VCITRNKNCPQNCEYAKYFPYKF--QYESANELFGTPNIIKMMRHVPEEKKQILATSIIMEGNAWTKDPIYK 81 8*****************987..89*****************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.64	8	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-17	12	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MEPLGNHRPY SVCITRNKNC PQNCEYAKYF PYKFQYESAN ELFGTPNIIK MMRHVPEEKK 60 QILATSIIME GNAWTKDPIY KWWIRCDAKA HLEDYEEKKK TELHLLINDT L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	480521

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473866	8e-69	AB473866.1 Arabidopsis thaliana ASL33 mRNA for ASYMMETRIC LEAVES2-like 33 protein, complete cds.
GenBank	DQ056480	8e-69	DQ056480.1 Arabidopsis thaliana LOB domain family protein (At1g36000) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865796.2	7e-49	LOB domain-containing protein 5
Swissprot	Q9C8V8	7e-43	LBD5_ARATH; LOB domain-containing protein 5
TrEMBL	D7L6Z6	2e-78	D7L6Z6_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__3222__AT2G19510.1	4e-79	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36000.1	3e-45	LOB domain-containing protein 5

Link Out ? help Back to Top
Phytozome	480521
Entrez Gene	9322102