PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480722
Common NameARALYDRAFT_480722, GBF5
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 172aa    MW: 19019 Da    PI: 5.2045
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480722genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.62.4e-123187561
            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
            ++ +r+ +NRe+ArrsR RK++ ++ L+  + +L++ N++  + l   ++++ k ++
  480722 31 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 87
            57899*********************************8877777666666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-102275No hitNo description
SMARTSM003385.7E-162791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1972992IPR004827Basic-leucine zipper domain
PfamPF001701.4E-93182IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-123182No hitNo description
CDDcd147022.09E-213283No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASSSSTYRS SSSSDGGNNN PSDSVVTVDE RKRKRMLSNR ESARRSRMRK QKHVDDLTAQ  60
INQLSNDNRQ ILNSLTVTSQ LYMKIQAENS VLTAQMTELS TRLQSLNEIV DLVQSNGAGF  120
GVDQIDGCGF DDRTVGIDGY YDDMNMMSGV NHWGGSVYTN QPIMANDINM Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMLSNRESARRSRMRKQK
24350RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00267DAPTransfer from AT2G18160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap480722
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072120.0AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence.
GenBankAK2302440.0AK230244.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-13-A15.
GenBankAY0372160.0AY037216.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds.
GenBankAY1335450.0AY133545.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds.
GenBankBT0007000.0BT000700.1 Arabidopsis thaliana clone RAFL08-13-K01 (R11176) putative bZIP transcription factor (At2g18160) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888357.11e-123bZIP transcription factor 2
SwissprotQ9SI151e-122BZIP2_ARATH; bZIP transcription factor 2
TrEMBLD7LB861e-121D7LB86_ARALL; G-box binding factor 5
STRINGfgenesh2_kg.3__3423__AT2G18162.11e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.11e-107basic leucine-zipper 2
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]