PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480862
Common NameARALYDRAFT_480862
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 167aa    MW: 18702.1 Da    PI: 8.7421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480862genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.78.9e-1692140153
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
             +++kGVr ++ +g+W AeI+dps    + r +lg+f tae+Aaka+  a+ +l
  480862  92 KKHKGVRKKP-SGKWSAEIWDPSL---KVRRWLGTFPTAEMAAKAYNDAAAEL 140
             589****999.7*********943...5999***************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-1792128No hitNo description
PROSITE profilePS5103218.43993154IPR001471AP2/ERF domain
SMARTSM003805.9E-2693157IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1493140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-1993141IPR001471AP2/ERF domain
PRINTSPR003679.3E-794105IPR001471AP2/ERF domain
PRINTSPR003679.3E-7116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MENSENVPSY DQNNNFTPYL TRDQEHVIMV TALRQVISNF GSDTPCLHHP TRSNAWEAHL  60
PPLNAGPCPL CSITGCYGCV FPRHEEIIRK EKKHKGVRKK PSGKWSAEIW DPSLKVRRWL  120
GTFPTAEMAA KAYNDAAAEL VVRRPARRGT KNGEEASTKK TTVEDD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap480862
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608811e-148AY560881.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g20350) mRNA, complete cds.
GenBankBT0246981e-148BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884195.11e-123ethylene-responsive transcription factor ERF120
SwissprotQ9SK671e-91EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLD7L2W01e-122D7L2W0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__3563__AT2G20350.11e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.17e-79ERF family protein