PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481142
Common NameARALYDRAFT_481142, HAT9
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 274aa    MW: 29752.4 Da    PI: 7.6983
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481142genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18112166256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ ++tkeq   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
    481142 112 RKKLRLTKEQSALLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 166
               788899***********************************************98 PP
2HD-ZIP_I/II124.55.1e-40112201191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLE+sF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l
       481142 112 RKKLRLTKEQSALLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENMRLQKEIQELK-TL 201
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.941108168IPR001356Homeobox domain
SMARTSM003895.7E-16110172IPR001356Homeobox domain
SuperFamilySSF466891.54E-18110176IPR009057Homeodomain-like
PfamPF000461.2E-15112166IPR001356Homeobox domain
CDDcd000869.45E-17112169No hitNo description
Gene3DG3DSA:1.10.10.603.7E-17112166IPR009057Homeodomain-like
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PfamPF021831.7E-9168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-23168211IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.5.1709.6E-4172200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPT PNNYSSAIRR SSGCKLEPSL TLSLSGDPSV TVVTGADQLC  60
RQTSSHSGVS SFSSGRVVKR ERDGGEESPE EEDTTEKVTS EYNEDEEGIS ARKKLRLTKE  120
QSALLEDSFK HHSTLNPKQK QVLARQLNLR PRQVEVWFQN RRARTKLKQT EVDCEFLKKC  180
CETLTDENMR LQKEIQELKT LKLTHQPFYM HMPASTLTMC PSCERIGAGG GNGGGGGSVA  240
TAVVVDGSTA KGAFSISSKP HFFNPFTNPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap481142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292180.0AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885765.10.0homeobox-leucine zipper protein HAT9
SwissprotP466031e-154HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLD7LE400.0D7LE40_ARALL; Homeobox-leucine zipper protein 9
STRINGfgenesh2_kg.4__202__AT2G22800.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-138HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]