PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481204
Common NameARALYDRAFT_481204
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 164aa    MW: 17759 Da    PI: 10.0683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481204genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-192776255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  481204 27 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 76
            69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-222785IPR016177DNA-binding domain
PROSITE profilePS5103222.8132784IPR001471AP2/ERF domain
SMARTSM003802.1E-382790IPR001471AP2/ERF domain
PRINTSPR003674.2E-92839IPR001471AP2/ERF domain
CDDcd000181.15E-262886No hitNo description
PfamPF008472.9E-122876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-302885IPR001471AP2/ERF domain
PRINTSPR003674.2E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
METGAAMTTT VTAATMGIGT RKRDLKPYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP  60
EAAARAYDTA VFYLRGPSAR LNFPELLAGL TVSNGGGRVG DLSAAYIRRK AAEVGAQVDA  120
LGATVVVNSG EKSGNGSLER VDLNKLPDPE NSDDDDDEWV KRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-162684463ATERF1
3gcc_A5e-162684463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap481204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023911e-150AC002391.3 Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence.
GenBankAK1184951e-150AK118495.1 Arabidopsis thaliana At2g23340 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-73-B20.
GenBankBT0037411e-150BT003741.1 Arabidopsis thaliana At2g23340 mRNA, complete cds.
GenBankCP0026851e-150CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878679.11e-115ethylene-responsive transcription factor ERF008
SwissprotO221742e-95ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLD7LFA11e-113D7LFA1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__264__AT2G23340.11e-114(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.16e-89DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]