PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 48125
Common NameMICPUCDRAFT_48125
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family WOX
Protein Properties Length: 203aa    MW: 21433.2 Da    PI: 9.5628
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
48125genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.5e-18126185357
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               +R+++t+ ql +LeelF     +p+ e r++++++l     ++e++V++WFqN++a++kk
     48125 126 PRWNPTPAQLARLEELFLTgMGTPNGELRTQITEELaklgPINEANVYNWFQNKKARMKK 185
               8*****************99*****************9999******************8 PP
2Wus_type_Homeobox77.71.6e-25125185363
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 
                         +RW+Ptp Q+  Leel+ +G+ tPn e  ++it+eL++ G i+++NV++WFQN+kaR ++
              48125 125 APRWNPTPAQLARLEELFLTGMGTPNGELRTQITEELAKLGPINEANVYNWFQNKKARMKK 185
                        68********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-13118188IPR009057Homeodomain-like
PROSITE profilePS5007112.147121186IPR001356Homeobox domain
SMARTSM003896.5E-9123190IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-11126191IPR009057Homeodomain-like
CDDcd000861.85E-8126187No hitNo description
PfamPF000461.3E-15126185IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEQQAQPAPS PAPSPAPPAA EAPPPQWRPT AEDAAKLTPT QLDTLRHQIA AFSHVCNQAI  60
ILAQQKVEEG KSFNAPGNSL PGRGAGVMHA LSSSMGISAS GAGAQPSYPA PVYNKNPDGP  120
RGPSAPRWNP TPAQLARLEE LFLTGMGTPN GELRTQITEE LAKLGPINEA NVYNWFQNKK  180
ARMKKAERER EAALAAGRPP PV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061270.11e-144predicted protein
TrEMBLC1MZS61e-142C1MZS6_MICPC; Predicted protein
STRINGXP_003061270.11e-143(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP644567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-18WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]