PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481339
Common NameARALYDRAFT_481339
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 290aa    MW: 31799.7 Da    PI: 7.3586
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481339genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.66e-09546439
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
              r C+ +++  ++lfC+ +  +lC  C  ++H        H++
    481339  5 RLCDSCKSTTATLFCRADAAFLCGVCDGKIHTAnklasrHER 46
              78******99*********************55666767765 PP
2zf-B_box27.95e-094792342
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
    481339 47 VWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplssrHERVPI 92
              689*****************************66999999*99997 PP
3CCT69.77.6e-24228271144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  481339 228 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 271
             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-15249IPR000315B-box-type zinc finger
PROSITE profilePS5011910.708249IPR000315B-box-type zinc finger
PfamPF006436.9E-7546IPR000315B-box-type zinc finger
CDDcd000214.51E-9549No hitNo description
PROSITE profilePS5011910.8934592IPR000315B-box-type zinc finger
PfamPF006432.7E-74792IPR000315B-box-type zinc finger
CDDcd000214.78E-104892No hitNo description
SMARTSM003364.2E-115092IPR000315B-box-type zinc finger
PfamPF062031.2E-17228270IPR010402CCT domain
PROSITE profilePS5101716.658228270IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASSRLCDSC KSTTATLFCR ADAAFLCGVC DGKIHTANKL ASRHERVWLC EVCEQAPAHV  60
TCKADAAALC VTCDRDIHSA NPLSSRHERV PITPFYDTSP AKSASSSINF VDEDGGDVSA  120
SWLLHKEGIE ITNLFSDLDY PKMEVTSENN SSGNDGVVPV QSKMFLNEDY FNFDLSASKI  180
SSNGFNFINQ TVSRSIDVAL VPESGGVTAE ITNTATVTPA VQLSPAEREA RVLRYREKRK  240
NRKFEKTIRY ASRKAYAEMR PRIKGRFAKR TDSRENDGGD VGVYGGFGVV
Cis-element ? help Back to Top
SourceLink
PlantRegMap481339
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857290.0AY085729.1 Arabidopsis thaliana clone 17434 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883032.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK530.0COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLD7LIY80.0D7LIY8_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.4__399__AT2G24790.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.10.0CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]