PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481434
Common NameARALYDRAFT_481434
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 220aa    MW: 24479.4 Da    PI: 4.7052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481434genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-162775355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            y+G r ++ +g+Wv+eIr+ps+   + r++lg+f tae+Aa+a++ a+++++g
  481434 27 YHGARMRS-WGKWVSEIREPSK---KSRIWLGTFPTAEMAARAHDVAALSIKG 75
            44557666.**********965...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1552283IPR001471AP2/ERF domain
SMARTSM003805.7E-332689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-302684IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-202684IPR016177DNA-binding domain
PfamPF008476.9E-102775IPR001471AP2/ERF domain
PRINTSPR003672.3E-92738IPR001471AP2/ERF domain
CDDcd000181.49E-312785No hitNo description
PRINTSPR003672.3E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVDSHGSDTE CSSTKKRKEK PKEKGVYHGA RMRSWGKWVS EIREPSKKSR IWLGTFPTAE  60
MAARAHDVAA LSIKGSSAIL NFPELADFLP RPVSLSQQDI QAAATKAAMM DFETVSFHLQ  120
DETTPLQTRC DTEKIEKRSS SSSSSSSSSS SMLSEELGDI VELPSLENNV KTDFALYDSL  180
EGLVSMPPWL DVTEEDFTYG HDSVMLDPRL QESFLWNYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1723831172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap481434
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053950.0AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAY9741980.0AY974198.1 Arabidopsis thaliana clone At2g25820 AP2/EREBP transcription factor mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884980.11e-161ethylene-responsive transcription factor ERF042
SwissprotQ52QU11e-118ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLD7LBI31e-160D7LBI3_ARALL; Transcription factor
STRINGfgenesh2_kg.4__494__AT2G25820.11e-161(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.11e-117ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]