PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

481524

Common Name

ARALYDRAFT_481524

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

YABBY

Protein Properties

Length: 168aa MW: 18834.6 Da PI: 9.8586

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
481524	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	185.1	3.7e-57	5	156	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened 106 ++eq+Cy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ + ++++ + e ++++++k +s+ + e+ 481524 5 AMATEQLCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF--HATNYAVPEYGSSSRDHTKIPSR--------ISTRT--ITEQ 95 5689****************************************9999988887774..22222222222222222222211........11111..1223 PP YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + v r ekrqrvPsayn+fikeeiqrika+nPdishreafs aaknWahfP+ihfgl 481524 96 RIVNR---RKIASEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSSAAKNWAHFPHIHFGL 156 33333...23357***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.3E-66	7	156	IPR006780	YABBY protein
SuperFamily	SSF47095	5.63E-8	95	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	104	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MANSAMATEQ LCYIPCNFCN IILAVSVPCS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR 60 PNFHATNYAV PEYGSSSRDH TKIPSRISTR TITEQRIVNR RKIASEKRQR VPSAYNQFIK 120 EEIQRIKANN PDISHREAFS SAAKNWAHFP HIHFGLMLES NKQAKLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	481524

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119091	0.0	AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19.
GenBank	BT003734	0.0	BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885257.1	1e-117	axial regulator YABBY 5
Refseq	XP_020885258.1	1e-117	axial regulator YABBY 5
Swissprot	Q8GW46	1e-114	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7LE80	1e-121	D7LE80_ARALL; Plant-specific transcription factor yabby family protein
STRING	fgenesh2_kg.4__584__AT2G26580.2	1e-122	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-116	YABBY family protein

Link Out ? help Back to Top
Phytozome	481524
Entrez Gene	9315054

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]