PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

481647

Common Name

ARALYDRAFT_481647

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YB

Protein Properties

Length: 254aa MW: 27694.1 Da PI: 3.9891

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
481647	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.1	2e-13	10	102	7	94
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP+a v r++k l + + i k+a e + fi +++s a+d c+ +r+t+++dd++ al ++ f +++eplk+ l+ +++ + 481647 10 ELPLAIVRRVVKDKLSEcspeyDVSIHKEALLAFSESARIFIHYLSSTANDFCKDARRQTMKADDVFKALEEMDFSEFLEPLKTSLEDFKKKN 102 69********999652222356899*********************************************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	6.9E-8	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.2E-24	10	99	IPR009072	Histone-fold
SuperFamily	SSF47113	1.5E-18	12	101	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MESEKVVVDE LPLAIVRRVV KDKLSECSPE YDVSIHKEAL LAFSESARIF IHYLSSTAND 60 FCKDARRQTM KADDVFKALE EMDFSEFLEP LKTSLEDFKK KNAGKKAGGG AASKPAGGAA 120 SKSAGATASK PKETKKRKQE GPSTQKGARK SKIDEETNKN DEENENDNTE EENGNDEEDD 180 NDDENTEENG NDEENEKEDE GNSMEENGNE SEESGNEDHS MDENGSGDGE DNENEDGSGS 240 GSGEEVEGDE EDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	481647

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004083	0.0	BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883388.1	1e-178	DNA polymerase epsilon subunit 3
TrEMBL	D7LHL1	1e-177	D7LHL1_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.4__707__AT2G27470.1	1e-178	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-72	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	481647
Entrez Gene	9315158