PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482096
Common NameARALYDRAFT_482096
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 154aa    MW: 17192.2 Da    PI: 5.7988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482096genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001439791055
            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
            + R d++ ++++ L++l+ +      +K + a++L + ++YI+ Lq
  482096 39 KERKDKLGERISALQQLVSPY-----GKTDTASVLLEGMQYIQFLQ 79
            67899999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9372978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-83789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-113892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-53983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEYSRDSADM MMENKRNVYS PEENNIKRHK SSDLSFSSKE RKDKLGERIS ALQQLVSPYG  60
KTDTASVLLE GMQYIQFLQE QVKVLSAPYL QATPTTSQEE LEEYSLRSKG LCLVPLEYTS  120
GVAQTNGADI WAPVKTPTSS HAFNLSSSNS PFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap482096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760410.0AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883447.11e-111transcription factor bHLH154
SwissprotQ7XJU11e-102BH154_ARATH; Transcription factor bHLH154
TrEMBLD7LDP01e-109D7LDP0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1156__AT2G31730.11e-110(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-94bHLH family protein